Package index • CellBarcode

All functions
`BarcodeObj-class` `BarcodeObj`	BarcodeObj object
`CellBarcode-package` `CellBarcode`	DNA Barcode Analysis toolkit
`bc_2df()` `bc_2dt()` `bc_2matrix()`	Transforms BarcodeObj object into another data type
`bc_auto_cutoff()`	Finds barcode count cutoff point
`bc_barcodes()`	Gets barcode sequences
`bc_cleanBc()`	Accesses cleanBc slot in the BarcodeObj object
`bc_create_BarcodeObj()`	Create a BarcodeObj object from extracted barcodes data
`bc_cure_cluster()`	Clean barcodes by editing distance
`bc_cure_depth()`	Filters barcodes by counts
`bc_cure_umi()`	Filters UMI-barcode tag by counts
`bc_extract()`	Extract barcode from sequences
`bc_extract_sc_fastq()`	Extract barcode from single-cell sequencing fastq file
`bc_extract_sc_sam()` `bc_extract_sc_bam()`	Extract barcode from single-cell sequencing sam file
`bc_messyBc()`	Accesses messyBc slot in the BarcodeObj object
`bc_meta()` `bc_meta<-`()	Accesses and sets metadata in BarcodeObj object
`bc_names()` `bc_names<-`()	Access & update sample names in BarcodeObj & and BarcodeQcSet
`bc_obj`	A dummy BarcodeObj object
`bc_plot_count()`	Plot for counts distribution
`bc_plot_mutual()`	Barcode read count 2D scatter plot of sample combination
`bc_plot_pair()`	Barcode read count 2D scatter plot for given pairs
`bc_plot_single()`	Scatter plot of barcode count distribution per sample
`bc_seq_filter()`	Remove low-quality sequence
`bc_seq_qc()` `bc_plot_seqQc()`	Evaluates sequences quality
`bc_splitVDJ()`	Parse VDJ recombination (experimental)
`bc_subset()` `bc_merge()` `+`(<BarcodeObj>) `-`(<BarcodeObj>) `*`(<BarcodeObj>)	Manages barcodes and samples in a BarcodeObj object
`bc_summary_barcode()`	Summary and evaluate barcode diversity
`bc_summary_seqQc()`	Summary barcodeQcSet
`format(<BarcodeObj>)`	Formats BarcodeObj object
`parse_10x_sam()`	Parse 10X bam file
`seq_correct()`	Sequence clustering
`show(<BarcodeObj>)` `show(<BarcodeQc>)` `show(<BarcodeQcSet>)`	Show BarcodeObj object
`subset(<BarcodeQcSet>)` `[`(<BarcodeQcSet>,<ANY>,<ANY>,<ANY>)	Subset the BarcodeQcSet

Reference

All functions